SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    35, 47, 81, 107, 109, 91, 92, 161, 188, 
    202, 203, 34, 31, 38, 80, 165, 166, 86, 
    106, 105, 247, 101, 33, 32, 163, 244, 
    212, 155, 102, 12, 564, 570
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00145

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "45.53"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "ref",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "lower_limit",
        "used_key_parts": [
          "lower_limit"
        ],
        "key_length": "3",
        "ref": [
          "const"
        ],
        "rows_examined_per_scan": 182,
        "rows_produced_per_join": 18,
        "filtered": "10.00",
        "index_condition": "((`twebezli_Commercemodalpopup`.`cscart_product_prices`.`lower_limit` <=> 1) and ((`twebezli_Commercemodalpopup`.`cscart_product_prices`.`product_id` in (35,47,81,107,109,91,92,161,188,202,203,34,31,38,80,165,166,86,106,105,247,101,33,32,163,244,212,155,102,12,564,570)) and (`twebezli_Commercemodalpopup`.`cscart_product_prices`.`usergroup_id` in (0,1))))",
        "cost_info": {
          "read_cost": "9.00",
          "eval_cost": "3.65",
          "prefix_cost": "45.53",
          "data_read_per_join": "438"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ]
      }
    }
  }
}

Result

product_id price
12 30.00000000
31 32.00000000
32 299.99000000
33 169.99000000
34 25.00000000
35 31.99000000
38 16.97000000
47 29.99000000
80 55.00000000
81 49.50000000
86 359.00000000
91 10700.00000000
92 3225.00000000
101 188.88000000
102 295.00000000
105 169.99000000
106 179.99000000
107 465.00000000
109 140.00000000
155 79.99000000
161 279.99000000
163 899.99000000
165 599.95000000
166 749.95000000
188 10.00000000
202 34.68000000
203 34.68000000
212 129.95000000
244 729.99000000
247 329.49000000
564 1000.00000000
570 1000.00000000